Scaffold Ga0307984_1006404

Overview

Basic Information

• Taxon OID: 3300031658
• Scaffold ID: Ga0307984_1006404
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4455
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009987	Metagenome / Metatranscriptome	310	Y
F045800	Metagenome / Metatranscriptome	152	Y
F052862	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307984_10064043	F045800	AGGAGG	MLNHTPVEDCLEVKEYLDEMIEYYEYTHNPLLAERGKTYRDMKIALFGEDIDYGNTGNKDTRAWVC
Ga0307984_10064046	F052862	AGGA	VDEQSRTSQTQILEVKKDIEHLQYIIVELEKDKEFLKNHISEKNTQRLDDVSKINARFDKHIQTELSYHEAVRDKIVSEHRIIHKRIGQVERWVWVFFGGFTVISALLGKASFSTLFGN
Ga0307984_10064048	F009987	GGAG	MLGLIGNALGLGIKIMDKIEKNSDKASFEEFKARKKEMDNTLADGDVEGIDSMFEYLADRARGGSTGRKG