NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307984_1002331

Scaffold Ga0307984_1002331


Overview

Basic Information
Taxon OID3300031658 Open in IMG/M
Scaffold IDGa0307984_1002331 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #78
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7767
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025150Metagenome / Metatranscriptome203Y
F047922Metagenome / Metatranscriptome149Y
F079883Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0307984_10023311F079883AGGVSKILLGIIASMAAGGFLYYQFAVVPMQIKLEEQTAVILAQDLRDQEQKATIAAIQESAEKTAAASATLQK
Ga0307984_100233110F025150GGAGMINVYTEGKCLKDYTTFIDECIMALFPEDAQYDIYIEAEKFVDDDGTHAGFCLGDNRDCVISLATHWVYEDGEEVAYEPHELASNIAHELVHAKQFCKEQINMIDNVWKHNNLILNCDEVDYEDLPWEVEAYTYEVFLTDILWENV
Ga0307984_100233112F047922GAGGMILPVLEMTPQEIVLHKAQWMMANYYESHTHTDLRKDVLEWCKAHCFQWRFDFKRFTDIYADTVRFELEEDFTAFNEWYRGRWDV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.