Basic Information | |
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Taxon OID | 3300031658 Open in IMG/M |
Scaffold ID | Ga0307984_1002331 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7767 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (88.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Southern Ocean | |||||||
Coordinates | Lat. (o) | -68.5958 | Long. (o) | 78.1913 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025150 | Metagenome / Metatranscriptome | 203 | Y |
F047922 | Metagenome / Metatranscriptome | 149 | Y |
F079883 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307984_10023311 | F079883 | AGG | VSKILLGIIASMAAGGFLYYQFAVVPMQIKLEEQTAVILAQDLRDQEQKATIAAIQESAEKTAAASATLQK |
Ga0307984_100233110 | F025150 | GGAG | MINVYTEGKCLKDYTTFIDECIMALFPEDAQYDIYIEAEKFVDDDGTHAGFCLGDNRDCVISLATHWVYEDGEEVAYEPHELASNIAHELVHAKQFCKEQINMIDNVWKHNNLILNCDEVDYEDLPWEVEAYTYEVFLTDILWENV |
Ga0307984_100233112 | F047922 | GAGG | MILPVLEMTPQEIVLHKAQWMMANYYESHTHTDLRKDVLEWCKAHCFQWRFDFKRFTDIYADTVRFELEEDFTAFNEWYRGRWDV |
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