Scaffold Ga0307984_1002331

Overview

Basic Information

• Taxon OID: 3300031658
• Scaffold ID: Ga0307984_1002331
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7767
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025150	Metagenome / Metatranscriptome	203	Y
F047922	Metagenome / Metatranscriptome	149	Y
F079883	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307984_10023311	F079883	AGG	VSKILLGIIASMAAGGFLYYQFAVVPMQIKLEEQTAVILAQDLRDQEQKATIAAIQESAEKTAAASATLQK
Ga0307984_100233110	F025150	GGAG	MINVYTEGKCLKDYTTFIDECIMALFPEDAQYDIYIEAEKFVDDDGTHAGFCLGDNRDCVISLATHWVYEDGEEVAYEPHELASNIAHELVHAKQFCKEQINMIDNVWKHNNLILNCDEVDYEDLPWEVEAYTYEVFLTDILWENV
Ga0307984_100233112	F047922	GAGG	MILPVLEMTPQEIVLHKAQWMMANYYESHTHTDLRKDVLEWCKAHCFQWRFDFKRFTDIYADTVRFELEEDFTAFNEWYRGRWDV