NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307984_1000784

Scaffold Ga0307984_1000784


Overview

Basic Information
Taxon OID3300031658 Open in IMG/M
Scaffold IDGa0307984_1000784 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #78
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13519
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000902Metagenome / Metatranscriptome844Y
F063594Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0307984_100078418F063594N/AATNSRFEMVEANLVHGPSGDSTTEAYLTVSGSTSSYGNPGELCTFSADIDDGNVRLLATNISSDATVFKFQRTLIDL
Ga0307984_10007849F000902N/AMTNHTCYVCKKTFTNAIYWYDSLHDTKYDKRIIRPFCGPPCANKYREISDVNDYPIRKPFPQGAGWEIISNIDYIEYETD

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