Basic Information | |
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Taxon OID | 3300031652 Open in IMG/M |
Scaffold ID | Ga0315553_10000183 Open in IMG/M |
Source Dataset Name | Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-40 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 55785 |
Total Scaffold Genes | 108 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (14.81%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.722 | Long. (o) | -70.847 | Alt. (m) | Depth (m) | .4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F028664 | Metagenome | 191 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315553_1000018344 | F028664 | N/A | MTRILIGGQALRELGSDRHTNDVDYLVNDTSTKDAFITSEKVDLINANGNKFFAEVFKIEEGNKIATPQSLLELKAYSFVQHCQNFNWAKVDSTEYDIKFLVRKFNLKSIKIANKYMTSGELSEINKIINSVKF |
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