Scaffold Ga0307514_10000193

Overview

Basic Information

• Taxon OID: 3300031649
• Scaffold ID: Ga0307514_10000193
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 170954
• Total Scaffold Genes: 188
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 130 (69.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.6253
  • Long. (^o): -120.532

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008227	Metagenome	336	Y
F008531	Metagenome	332	Y
F019765	Metagenome	227	Y
F080709	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307514_10000193111	F008531	GAGG	MCSLGVKGHTKSCEAHGRDQQFGDDESIGIGNSQRLRKEGNARIKKVSAMRPGLAKMIEKVCIS
Ga0307514_10000193129	F080709	N/A	MVVLSTRKREIRGDRGNHHEKMGLEKISCASQLTIPDTAGTIPDPAGNITDTGSSKPNQASCTPDFT
Ga0307514_10000193147	F008227	N/A	MDTERPPAGESGSNTGRFADAISNTELLGTQPERRHKLVHRNAANVATKHMTQDAHLMIVGKTGSSKNKKQHVVGCKYIPIVAKGGQLIE
Ga0307514_10000193148	F019765	GAG	MLQVCDKMEVRCVFYVKVSTFTHLEQSKMVLLTVNKSGILTLTIQHDLIVSVCFM