NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307990_1079527

Scaffold Ga0307990_1079527


Overview

Basic Information
Taxon OID3300031645 Open in IMG/M
Scaffold IDGa0307990_1079527 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #129
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1560
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013783Metagenome / Metatranscriptome268Y
F066663Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0307990_10795271F066663N/AKIIEWVFSILKRTITKGKPVGIITARDSSSLIQQFLSHNGININPNYIFAINDPALKLKGSTAERKKEAFRKFIDMGFNNFTFFDDDRENINLANSLNKEPGIKMKAKLIKQKWIPKFDDFK
Ga0307990_10795273F013783N/ALILEGITFKLALDFFLFLKKNRITSTSVKVDFFDRVKHQYVDFADVAAMQEYYNSNYMPLDNCNLGDLVSISFFEASSELYDFTTEFRALDVTSNLKLENGSTYDRQRNSGRKVLIDRQVQLIKNAVAEYVKYYSELKYIYTTGIYSPCYAVPGWSENTWYLKSFREAFTASRDTAQFPYSDIKIEEFPPN

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