Basic Information | |
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Taxon OID | 3300031645 Open in IMG/M |
Scaffold ID | Ga0307990_1007534 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #129 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7447 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Southern Ocean | |||||||
Coordinates | Lat. (o) | -68.5958 | Long. (o) | 78.1913 | Alt. (m) | Depth (m) | 60 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F072364 | Metagenome / Metatranscriptome | 121 | N |
F083739 | Metagenome | 112 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307990_10075344 | F072364 | GAG | MADLIENLGFADGISGNSIKMFLDGVPVLALQNFNWKIKKGKKPLFGAGFKTAHGVTRSAHKIYEIDFEIKEILINSAINVVQTVKNAAFLSIFEDFTDIRNAVIIIMYPGAAAVRSKTFTGVEITDQEGGFSDSEDAEPIGIKCSGFATRATGIF |
Ga0307990_10075345 | F083739 | AGGA | MSETQEIKLTDKIISDLKEKYKGYPLFQITDGLTDDTFIIRGSNWDEFARIGNVQPGKENRVPLNMVKAFVVWPEIDQQDIEYNRSGNWQPGRIVALAEQIQEVLGYNKSFAVKKL |
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