Scaffold Ga0307990_1007534

Overview

Basic Information

• Taxon OID: 3300031645
• Scaffold ID: Ga0307990_1007534
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #129
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7447
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072364	Metagenome / Metatranscriptome	121	N
F083739	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307990_10075344	F072364	GAG	MADLIENLGFADGISGNSIKMFLDGVPVLALQNFNWKIKKGKKPLFGAGFKTAHGVTRSAHKIYEIDFEIKEILINSAINVVQTVKNAAFLSIFEDFTDIRNAVIIIMYPGAAAVRSKTFTGVEITDQEGGFSDSEDAEPIGIKCSGFATRATGIF
Ga0307990_10075345	F083739	AGGA	MSETQEIKLTDKIISDLKEKYKGYPLFQITDGLTDDTFIIRGSNWDEFARIGNVQPGKENRVPLNMVKAFVVWPEIDQQDIEYNRSGNWQPGRIVALAEQIQEVLGYNKSFAVKKL