Scaffold Ga0302117_10061258

Overview

Basic Information

• Taxon OID: 3300031639
• Scaffold ID: Ga0302117_10061258
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_32.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1752
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 49

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004712	Metagenome / Metatranscriptome	427	Y
F053313	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302117_100612581	F053313	N/A	LTTAAQTIDDGTEELASDVTEFINREFTVLDYSKAKCRRDTGYLLDAFSFDLNFGGNTASRWNADFYFWNQINRIPENQREATAKSYRQLGKICKEIVLGEYKGQTVLGELGTAVESKKVEMLANIFYKTQINNDTKYLPVKEEPDYTYSGVVFTDAQKIIEQRRTGLQFDTVKFVNATYSYIDINLTRRDARNLLTALQNDFKFENVLVAGPSYATNGAQNAVRTYTASFFDWEGRHVFPVFNSTMKGLKYVDSVVDLAALGAITGQKPNQAYIVATNYAVNYYIGDIYYWNGSTWVYVEANNTDLLDAFVGAWDRMKTNLVSNYSPDSEHSLMIEGLFNDCLKDNILRPNTLIFGSLVESIAHQFNGASAGVNRNALPLNFRNLGSAISAIASVLNEDGGRIRWSGADELNNQYFARGLKINGRTGRIEGRPFTSSVRKLARRASNSRAVV
Ga0302117_100612582	F004712	AGGA	MPITTVTTSQAPDAKPVAKNLVLSTTSAEIINVPNYRVPELVFGGSTTVEPGVGEIISPLVLCNVTNATVNVGVRVFRYYEGGAGTYFNIIKQLPVPAYDTIAIPLNGQFLNTGDILEAEASAN