NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307987_1040225

Scaffold Ga0307987_1040225


Overview

Basic Information
Taxon OID3300031631 Open in IMG/M
Scaffold IDGa0307987_1040225 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #181
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1536
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F007611Metagenome / Metatranscriptome348Y

Sequences

Protein IDFamilyRBSSequence
Ga0307987_10402251F000126N/AIMSKRDFKITRKEGEWYDTRVTDSYGREYQNWYETASEASKWVMYIWEKEDWFNSVNSEELLYKAIQECKAIDKKKGIGSIL
Ga0307987_10402255F007611N/AMSKKWITVLDYETSRVYQYQVSINKHSEDFIVFKGHRLSNVEWMEHQTATPITN

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