Scaffold Ga0307987_1030407

Overview

Basic Information

• Taxon OID: 3300031631
• Scaffold ID: Ga0307987_1030407
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #181
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1886
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014036	Metagenome / Metatranscriptome	266	Y
F026041	Metagenome / Metatranscriptome	199	Y
F102062	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307987_10304072	F102062	N/A	MKVLIWIRREDAVSGSINKYYTYLPINEQYQEWVQIEITQDEFVKLEDDKYE
Ga0307987_10304075	F026041	N/A	MIQIVKEKPIKSSTSVEGILVQVTGGQWYGLTRFQAPRNPWMGRAAKSTTTGRMDFGSGNETFQKSFSGKPDWEDIKTILMNVLNGAEPVIDKLTY
Ga0307987_10304076	F014036	N/A	MGSLFHIFALLFVIFLSFVFHCVVYEDDYVKKWYWKVLLGGGILILIFAGVMSY