Scaffold Ga0307987_1000577

Overview

Basic Information

• Taxon OID: 3300031631
• Scaffold ID: Ga0307987_1000577
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #181
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21676
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (44.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019751	Metagenome / Metatranscriptome	228	N
F050004	Metagenome / Metatranscriptome	146	Y
F056357	Metagenome / Metatranscriptome	137	Y
F083376	Metagenome / Metatranscriptome	113	N
F085538	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307987_100057712	F056357	AGCAG	MLPHVSTFMDSKILALVALLAIGTTYAYAETSTVEVPFESHGQSCWFDDLAIEYTCTWQGVVEKFTIEDLKEYKSILSNEVYDQEIQRLNEEALAEIAIEQAKLSPNEKIIQKIEEKLDRGIATATDSVLMNLLKELNTCKQGMDERTQHVQTAREFEISDFELWSVNNVKYDGPIGKIVMAIEECQAQEHVYKLSVGYQNFDFGSKQYSLNDKFTPDIQAVNYDNLLATSNSIDSSLICDSNQHSQQYKKQFGCMVLYDGLDAEEIKRQNEVRFGTDGKISYQSQVLTDYMDFLNNYGNKLATTEDKKVQELIAEPIANEWKENNNFYQNHLEE
Ga0307987_100057715	F085538	N/A	LTSENTYRVAVGINYWDDPKGLIKILTNDSVYDYVEKFYVIDGRYEGRLDEAESHLDYLTDLSEIYSKLHIVSMDGSKQIAKRNKYWELAQVDEMDYMIVCDSDEYMDFDITKLVSSLRTLDQRPEKCYPVKQHMEGISIMSRPRLFKGPFTFRHLQSEQDSTISHGSLYEKDGTEIINQMYAWFKDHPKRQINSDDQSGIDGINMWHDKTFRSRDRVIADRVYYDETPNR
Ga0307987_10005773	F019751	GAG	MTRTRGPELSKKLHEYVSTQWMFFGRNAYQISDQINKDTVLMSQFGKTSPPGIHYHVKQIQQEMENSISEDAMDTYIGEFIRARLGFEQDVIALEEIMLDEKNKGMEDMDKELYLKFARARHEIKLDSFKMLQDSALPLQVKKLKMERAKLRPARPMPEIEPPVEEDTNWQQDGERGATP
Ga0307987_10005777	F050004	N/A	MVLYISMDQKTWVQGDFTDSVTYDLSGKVYDENTLATARDISSFTGTLRLIDQDGELVFTTTENLTLGSDGTVLIKFASGKSPRLQGTFKVRLRLEVSGSRLTCVGVNGSDEIYFEYD
Ga0307987_10005779	F083376	AGGAG	MIKIYLDVKGDRLIESLDLGRVSLGESTKYTVYMKNTDPDWSIYNIKIENTNPELRFESPEMLKPNEVREVHVFWTPKLDNRQPLRAEFKFSGDIFIG