Scaffold Ga0302121_10009582

Overview

Basic Information

• Taxon OID: 3300031626
• Scaffold ID: Ga0302121_10009582
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB21_surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3555
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0136
  • Long. (^o): -139.5971
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060127	Metagenome	133	Y
F103923	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302121_1000958210	F103923	N/A	VSQAEIDMITSAQEGLMQMDPEGTKDIVQGMETTKARVAKGAGLTEPEFMGIKEILEKIGGAFKGMMGGGDTMTYMVDGNPVEMTERERMSAINSGMLVQDMGTYQVDDRMEQMTPNTYADRVASGEITPDELMMESSGSTMTEAEKANRANAEFNRRAQEEQERMFNMNNPPVMSGERPRLRPTQ
Ga0302121_100095827	F060127	AGGA	MAEETIQGGTMEDYAEYAKSLAVNIPEITWKDVGNVALDFTPIIGDIKGGYETVQMIGEELSKEDPNYYMIGALGGLGAAATIIGLVPGVGDVAKTAIMAGARRVAQGASDVGRGALEFVDRIEVDPNTLGALGGNVRLKPASKANKADLDPLGYQKTRMRDAYLADTDVRFTDLNENLPRKPMSWEETEGKVILPFYGDRTSGGLLVEGVNDVNFDTPVYTEAGVDFMRGPAAQTDDAIWASNQSIISRIDDEAEKAAIKFDNDDIIGMTGSMAPDANDFATFTGSAMAELVKASKITKKSAKEFDEIMKSIDPDFVGVLSPKIREWVETTTSPKRKSFIRLMDSAPMQAKGFPSPAEARYSVTDPTQRDMPAGMFGLGVAKIDTSAPLLYNTPKGNLPKANVPHSTYNTQMTSKGGYLGSLPPVPQGLIFTDIYNAMQGRLTKSGQPLNEAHKTYAIKTKMPAQKVTPEILEGVLGYLSRTER