Scaffold Ga0302135_10005592

Overview

Basic Information

• Taxon OID: 3300031625
• Scaffold ID: Ga0302135_10005592
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CBN3_surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7291
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 80.9595
  • Long. (^o): -132.1842
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077806	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302135_1000559211	F077806	N/A	ADKEYLDADKGIEVFRDDEKWRIYALHNKGAACKFGKGTEWCTAAPGLNYFEDYYDKEDPLFYFEDKENGKRFQFHFGSDQFMDEKDREVEDEERDFFIDLLAKTGAAKKYSAVQHWVTKNEVAQRIYDENTTSEDLFAIAKEYSGQGEREIIEMIIDSDMATGEILQYLILSGDEAGEEAIGNPMITDEWVNSLAYSEDGHLRYIAAVAVDYHNRGNVLTPETADKLSEDPLVHIRKKIAGHPSAPPETLAKMANRLMKGGEEQETTGSTFLSNLLRNNNLPTNLFVPLIEWSKSRGHGGNIRPKGFRDTLAPLAMESASRNRNAPPEVLVDIYNTFDNTAESGYRFGALNALAQNEKTPEDILLKISKNKNSAIKYEAEKTLEKLADQTGMDSLRENFRRFLK