NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302126_10057152

Scaffold Ga0302126_10057152


Overview

Basic Information
Taxon OID3300031622 Open in IMG/M
Scaffold IDGa0302126_10057152 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB4_20m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1617
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)75.0007Long. (o)-150.0027Alt. (m)Depth (m)20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004712Metagenome / Metatranscriptome427Y
F053313Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0302126_100571521F004712AGGAMPITTITTSQAPDAKPVAKNLVLSTESAEIINVPNYRVPELVFGGSTTVEPGVGEIISPLVLCNTTNATVNVGVRVFRYYEGGAGTYFNIIKQLPVPAYDTIAIPLNGQFLNTGDILEAEASANLAIHATL
Ga0302126_100571522F053313N/AGGNTASRWNADFYFWNQVNRIPENQREATAKSYRQLGRICKDIVIGEYAGQTILGEIGTTVESLKVEQLANIFYKTQINNDTKYLPVKMEPDYTYTPAAFTDAQAIIEQRRTGLQFDTVKYVGRTYNYIDLNLTRRDASNLLTAVQNDFKFEDVQAVGPSYQTNGSQNAVRTYTASFFDWEGRHVFPVFNSTNEALRYKGSVVDLAALGAITGQKPNQAYIVATNYATNFYTGDIYYWNANINDWSLDGPNNTDLLDAFVGAWDRMKTNLVNNYSPDSEHSLMIEGLFNDCLKDNILTPNTLIFGSLVESIAHQFNGASAGVNRNALPLNFRNLGSAISAIASVLNEDGGRIRWSGADELNNQYFARGLKINGRTGRIEGRPFTSSVRKLARRASNSRAVV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.