Scaffold Ga0302126_10003791

Overview

Basic Information

• Taxon OID: 3300031622
• Scaffold ID: Ga0302126_10003791
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB4_20m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8315
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 75.0007
  • Long. (^o): -150.0027
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026158	Metagenome	199	Y
F032077	Metagenome	181	N
F050008	Metagenome	146	N
F052258	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302126_1000379110	F026158	AGGAG	LNPTIEFKINDATESNICSAEESKASAVQCMEGFRDKMEMLMRAGDILDHCKRGRSTEKEAREARARSLKIWKDTGCPISQAAELGGASRTNFHKWLIREGHHTPKSK
Ga0302126_100037912	F032077	AGTAG	MDISMGDEETQLDLKSRMRDALAPMLANEQEKTAKNSLPNNNPEKWLTAASLFLSGASVHEVKKTMTLNHHIAKRINGIVKASDDARVFRHERAIQLASTIDEINSIGEKIAASYLDGSPEAEEKIKKAETKDLANLAVAQEKLHRTFDNVTGNNIQKIEVRHITTPEEAMSLIDSLPEAEVIDIGEDG
Ga0302126_100037918	F050008	AGG	MSLVNMNETQRELVMDLAEDFAPFVKKVESGMALTQNHYGAYGSMISKLSKGNRKLALVFSYALMMAGANGQGISDAMGAFFPE
Ga0302126_100037919	F052258	N/A	MKKTKQTISERKLVNSEREAEAAMILFACILGGVILILLAIAIG