Scaffold Ga0302114_10004195

Overview

Basic Information

• Taxon OID: 3300031621
• Scaffold ID: Ga0302114_10004195
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8873
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075610	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302114_100041955	F075610	N/A	MRTFVFLMMMLAASTLSMITPTSAQQNDDEKQTMIDHDGTDHYSSRSVRLSSDTTNIGSNERKILIENDYEVTYGTYFKIVRMKCGFDHAVKNPGKCTKNTYVLRKRGTDVPTIDPNTNEMIELVSEDGTETRHFEIPATSIAVGGTFALAYLEALDVDAETLKLIDSQYMHSPCMQLAVQNGEIIDHAYAVYGADWSVDTTAWSAKCDELNVDLTFTDEYGTGKCGNREEVNVLFHGNADDTAILRAEWVKFVSLFFDKEQFANDYFALESDAVEAIKTYVEKGIVASLSEKKTCVWVQKMGSYYEILHDTFRTSLCVDAGMHAYQGEAGVLKKAFAIDTQMEAFHSAIRDYDVVVDESYFYDVSSLSRVDYESNLAFDQLSGQTVKAKEGNGGLLLRVDASRGNGMTDDLKESGEVRPALLLNDLVTNVYGGTLSNDDACPKYFRNADESAIYVTHENCAALENADNEKKCVTDLKEEAERKTPSALFADSSAITTRDAIVATFGVSIATALSVLFAIA