Scaffold Ga0308009_10010498

Overview

Basic Information

• Taxon OID: 3300031612
• Scaffold ID: Ga0308009_10010498
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #127
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3848
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048916	Metagenome	147	Y
F056153	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308009_1001049810	F056153	N/A	MDSPAELAGFIESVGVPVATALGLGGALWWLIKYVLGSIVDKITEAQAQTEADIKDLKGIVIALIDKTTVAQSDLIRLDTMIRVRYGLAPDERRIGRNPDDKVK
Ga0308009_100104987	F048916	GGAG	MKLKLKLGTVLICLTFLTGCSLGLLSELVAPVTNFGLGLYNADTYYSKECAWYEEIKLAPDTKQWLADSKPPAGVIKDLSKVARNNDIFKEVCDPREPKKE