NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308009_10010498

Scaffold Ga0308009_10010498


Overview

Basic Information
Taxon OID3300031612 Open in IMG/M
Scaffold IDGa0308009_10010498 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3848
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048916Metagenome147Y
F056153Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0308009_1001049810F056153N/AMDSPAELAGFIESVGVPVATALGLGGALWWLIKYVLGSIVDKITEAQAQTEADIKDLKGIVIALIDKTTVAQSDLIRLDTMIRVRYGLAPDERRIGRNPDDKVK
Ga0308009_100104987F048916GGAGMKLKLKLGTVLICLTFLTGCSLGLLSELVAPVTNFGLGLYNADTYYSKECAWYEEIKLAPDTKQWLADSKPPAGVIKDLSKVARNNDIFKEVCDPREPKKE

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