NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307999_1018551

Scaffold Ga0307999_1018551


Overview

Basic Information
Taxon OID3300031608 Open in IMG/M
Scaffold IDGa0307999_1018551 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1737
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5735Long. (o)77.9231Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008307Metagenome / Metatranscriptome335Y
F070551Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0307999_10185511F070551N/AFKGDDKFTGDMNYPEAGGAKGLIGWINESGNILSGYKNEPRPKQPKTESKEIPF
Ga0307999_10185515F008307AGCAGMVKVLKRSSLEIAADVEEFFDGETIEEATKKAHYQIMPGKLAKINITDNKFIKATIKVVGEEHDNESKQYDKIVPEAEQHS

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