Scaffold Ga0307999_1012582

Overview

Basic Information

• Taxon OID: 3300031608
• Scaffold ID: Ga0307999_1012582
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2159
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5735
  • Long. (^o): 77.9231
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F019024	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307999_10125822	F000060	AGGAG	MASKFNSEFNYRYQVIGDTPWEKIKTLQGFLEGRIRAAALEEVSLLKNQAKLSKLKHLQNGGNGLEHEILELKAEILESKSHQETEKEAFELNHKEIAILKKLMKELYIIAEPTRIPGYSDEEMWEANQANEFTVNIGREIQAEMIANGRPSPAKLKNAMSNPYTWNALKDIGLVPKETKILVGNINPHDKIKLIGVEDEVI
Ga0307999_10125823	F019024	AGGAG	MKLYKLEASGYRAFFGTIENPIVRDITNIAQTPSCDAFLLLSKETQDGLELLSTVPAGFDFTYCQE