Scaffold Ga0307999_1002262

Overview

Basic Information

• Taxon OID: 3300031608
• Scaffold ID: Ga0307999_1002262
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5233
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5735
  • Long. (^o): 77.9231
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008782	Metagenome / Metatranscriptome	328	Y
F052205	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307999_10022621	F052205	N/A	DGKPSELTYSQWLTIEGNIDFTSLTTTMKADILNRLNYLSEEEAEEIITKLYNNRYEKDPQKQWLKMLKDGVFGYRDI
Ga0307999_100226215	F008782	N/A	MKKPIFRVFISYEIKSKSSVTRKVITGILDTFALTSNIEEIKKDQELIDRICYLNKKKLNKVDITITSVDVENQYGETVDRFCDEY