Scaffold Ga0307999_1000869

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307999_1000869

Scaffold Ga0307999_1000869

Overview

Basic Information
Taxon OID	3300031608 Open in IMG/M
Scaffold ID	Ga0307999_1000869 Open in IMG/M
Source Dataset Name	Marine microbial communities from water near the shore, Antarctic Ocean - #1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8402
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (25.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5735	Long. (^o)	77.9231	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026402	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307999_10008691	F026402	GGA	MFQAIGKEIITKLSASANFIAANGSNKVFPVIIPQGVTYPSTTFEIMNVSNFLSKGSSLNSCDVSIRIACFADSYLTTYNQAKATVEALDMVTVTYTEDGIGYTAKFRFETLDDEYFKGAEKFYKNVIF

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