NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302119_10106897

Scaffold Ga0302119_10106897


Overview

Basic Information
Taxon OID3300031606 Open in IMG/M
Scaffold IDGa0302119_10106897 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1134
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)450
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063607Metagenome129N
F099142Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0302119_101068971F099142N/AMSEYTDDISEMIADLPVNYIIGVTTYTGAVNEISKGQDSGDGGFLDDFDLTIVAKKADHSTLPDIGSKLTVDGQSYRIEKITTTPADAAEVRFNLMSADR
Ga0302119_101068972F063607GAGMTIRINSAAFTQQLRRYAKVNKRSFKEIVNAKALDMAFQALKYTDAASASAIEYKLGAIGNKVSKSRKTGQLRKGKRILKANSFAARIVNSRRKKAGQPMIWGKDLEKAAQKLINMRVRAVKFLKSGWLPAIKKLSYAVERRDRRPWPKGLSKGKAATKGWGRPAKSVLHPEAWVANSATNNSQQAISKIKAGLSMGMAAAVADMAIYIQKKLGRDYKKAGF

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