Scaffold Ga0302119_10000042

Overview

Basic Information

• Taxon OID: 3300031606
• Scaffold ID: Ga0302119_10000042
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42000
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (53.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 450

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050421	Metagenome	145	Y
F096642	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302119_1000004248	F096642	N/A	MKNKNENTNELTVKGLTSNEDETFTGVRNDSFGHDYRDHDQDAWNFEIDETDCWK
Ga0302119_1000004251	F096642	AGGA	MSHPLCYNRLMIIETDMKEKENTNELTVKGLLSNEDETFTGVRNDSFGHDYRDHDQDTWNYEIDETDCWK
Ga0302119_1000004252	F050421	GGA	MKIENIEVKVGDEIRVGMQLMIVDEITEFDTIIAIDEDGAELELTENEFDVYVDRSKVKG