NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302132_10254083

Scaffold Ga0302132_10254083


Overview

Basic Information
Taxon OID3300031605 Open in IMG/M
Scaffold IDGa0302132_10254083 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)829
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)121
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044553Metagenome / Metatranscriptome154N
F061282Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0302132_102540831F044553GGAMAEQDSILKLNTDIQTLKIKDEYRTKELDALMKKLDASTNKLNDLSENIGRLLTAQDVNKMTDIEFRDEMKILHSRIGDLQDKMNQMVDRTET
Ga0302132_102540833F061282N/ATGGMAYRDKPLDLGKPPKGLIKKKFGGIDVFGVDPSLFGRALLGKKKYGRYKTYVGEDEIGKYITAWARKYPNKPIIVMDSVTGCMQYLRHGK

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