Scaffold Ga0302132_10123539

Overview

Basic Information

• Taxon OID: 3300031605
• Scaffold ID: Ga0302132_10123539
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1293
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 121

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037424	Metagenome	168	Y
F044592	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_101235391	F037424	AGGAG	MSWSGTVTCSHCYTKGHNKRKCEHLTAKLKEQYDASSALAAQYRERGNEGDAEYYNIRAENRRQQYMKRTKIDLATGEKVKNKTAKAERMKNVTCGYCAEYGHTRRICETVKRDKLVFIEESRRVRVGVLEAARETGIGVGSMIPIRTNGYNNAGEWGTHTSLRYVKGVDWNVVTAGRAGLWVYHIIAGKLGAANQSRWTSRDKILNLRENFNEACSYAELQNQAEPTASLIPSLDPPDGWLECEPSTIDVANQFPTKGNRHQKMRGHDYRWPSGVTAEV
Ga0302132_101235393	F044592	GAGG	MQVGDLVKYKGTLGIVTARCTKRWAKPADVWVLWTNKNKPMIENGDYMELVNASR