Scaffold Ga0302132_10057045

Overview

Basic Information

• Taxon OID: 3300031605
• Scaffold ID: Ga0302132_10057045
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2026
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 121

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002187	Metagenome / Metatranscriptome	585	Y
F040138	Metagenome	162	Y
F061261	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_100570451	F061261	N/A	MKKNILCFFRAGLGDFYLNFPLFYTLRNTYKDDRITLVAPFLAADLLHNKGPWFDEIIEPNKFVPERKYDKVFDMDITRTGRTAIFKPEMDYFDMLESTYDIS
Ga0302132_100570454	F040138	GGA	MPFYDFKCDKCEKIVEDEFFKIADDKYIECCGIQMKQAFLSAPGLSDPGGIGQKWTNDGYQMKAEGAGLRIVKEKWEKGKNVIRDDVHKNDPGSR
Ga0302132_100570455	F002187	N/A	MKFKNGVFVDQKFMETIAKCNEYEDWEPKGAYWFNRLVKKLRSAQEDYDDTRTKLVKKYADEPDKDGNVKVAEVHIPAFSTAMGELMEEEFEIEGIKPIKFPDGLKLSPIEMGLMEEVVDMSAFLDDDGDD