Scaffold Ga0302132_10023460

Overview

Basic Information

• Taxon OID: 3300031605
• Scaffold ID: Ga0302132_10023460
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3321
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 121

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078539	Metagenome	116	Y
F091752	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_100234601	F078539	N/A	MAEKPLTDRENFIIASTIMVVSAEMKKMTRDTRMNILQFVREEKYQSVTDQDWREIAQGIDDHKKDVFGLMVKMFKESSSNPSTSSKKSMAELDSSMKGEIDNIDFDELKNVVDASDDPKLREYYLTMKQLKRDFDDERNDRKN
Ga0302132_100234604	F091752	N/A	MSQILQTEFMPENIQWLGLGNKYLENQYDTVDTWRGKGLVDKVDSDKKFLTEYNFVLKNMSLR