Scaffold Ga0302132_10009310

Overview

Basic Information

• Taxon OID: 3300031605
• Scaffold ID: Ga0302132_10009310
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5430
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 121

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003330	Metagenome / Metatranscriptome	493	Y
F030754	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302132_1000931011	F003330	GGAG	MRKKDAWGKPILRVGDIVQSLPLKDDPGTVVKILQVNANGAHVVAVKWFTWDNGRTSEEHVRELKLVSKV
Ga0302132_100093108	F030754	GGAG	MARTPKGNNASALANGNRQAADLTHGVTCSFAGGCRVFDANINKKHEARWRCEHHGGVKHSRANARDEEYSNGIPGAERRMRFARVRNRQRKAAAVTAHIPTFLDPRPPKAVKKVTPKKMKIETKSTKESRRAAAMAELGLTEADLIKFAATN