Scaffold Ga0307989_1018011

Overview

Basic Information

• Taxon OID: 3300031603
• Scaffold ID: Ga0307989_1018011
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #185
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1795
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006364	Metagenome / Metatranscriptome	375	Y
F007608	Metagenome / Metatranscriptome	348	Y
F012070	Metagenome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307989_10180112	F012070	AGGA	MTIKIKINEDDYILYEILCDYCDEEYVIRCKMKEEDSKPAIECCPFCSNLIEEPEESIIDNEETSWN
Ga0307989_10180115	F006364	AGGAG	MEVELTNDTRKMRIINYLDYMDDRALQEITVALYNLSKRRQEISNRKQMEQVDESGE
Ga0307989_10180116	F007608	GGAG	MSQENKYEKLPNSMYPKVRQQVVDRIATFEKVLEDHAAAQKEALKMVYEQLEEA