Scaffold Ga0307993_1013194

Overview

Basic Information

• Taxon OID: 3300031602
• Scaffold ID: Ga0307993_1013194
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2112
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015734	Metagenome / Metatranscriptome	252	Y
F019756	Metagenome / Metatranscriptome	228	Y
F050011	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307993_10131942	F050011	N/A	MNVSIERFSDYLKPYLLQTVAICTDKKIIRKGKLRIFQMKQHYARLTLEDEVRTRIYEIPYPFNIDTAGNKTTLSYKIDEFLNFDELDLQVKLLDSTKKSKLYNNNVYIMPLADVDL
Ga0307993_10131943	F015734	N/A	MTVQRTTLDSLLLNKVCEIRFVRRRPRAGDGPTRRMLCTKSYEILNSVNGRTTLNYRPPSGPVQVNEARDNLIVVWDVLMQDYRTVSMAACDLIQDIAANEFWEYFNENIYPMSPGQKISFMNS
Ga0307993_10131944	F019756	N/A	MAQRSIDTLATQKHLIDLSTHSEGDMGLTDDFELQMIFDDILLVEYVDENETGEIQRNGIFVPTNAITKAWRKARVVLIGPKTVYTKVGDVVIFPSNLGVTVQNLDVNGRKVKKGIFLNEDRLFGICKLKDDSTEDNS