Scaffold Ga0307993_1006498

Overview

Basic Information

• Taxon OID: 3300031602
• Scaffold ID: Ga0307993_1006498
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3183
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012624	Metagenome	279	N
F015934	Metagenome / Metatranscriptome	251	N
F030875	Metagenome / Metatranscriptome	184	N
F073753	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307993_10064983	F015934	GGAG	MRQTKELLFSGEHPRLITGASYSVYSIAIITGISNATLYRRLKGRDEVTEWDITPAHERNPERYGNKGRDSVGHSRLETATERLSAEWLRVATIKPINNNIGE
Ga0307993_10064984	F012624	AGG	MLTNYKGNSAHLKALKLARIEQHIADGVVWLSLSLGVVAVFTFLNWAMLARYGA
Ga0307993_10064985	F030875	GAGG	MKTTKALKIKVITTRPAPKRITQPASQWRDIMGGMKRGHWFEVECKTGDNIYSRVNTAANNYCRGRYTFYKTAENKYIFEIIKG
Ga0307993_10064988	F073753	GAG	MTDLISKLSKIDQRNVKLAIIHANNGNHRALDSMVRAANNRSAPILTAIRAAL