NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307993_1002479

Scaffold Ga0307993_1002479


Overview

Basic Information
Taxon OID3300031602 Open in IMG/M
Scaffold IDGa0307993_1002479 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #260
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5727
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046021Metagenome / Metatranscriptome152Y
F072747Metagenome121N
F089439Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0307993_10024791F089439N/AKGNIFICLNRATYKGNIPTELEGKYSRKVYDEEGELIEILPTTFEKMASDNRIKYGGVLEFKIGAKKYFVIELDCSWLDGSVSALLDLGSDLAYPNNCLMTNEEAMVLVRANQPKDAI
Ga0307993_10024797F046021N/AMKKLTPKYNDNKSIRLKIDKLLEQNCSNVANSDTGSQNDIGGEKEVQWAWEKIQERIKELDPIFYEVIKSR
Ga0307993_10024799F072747N/AMKTNDNITTKAIQLLRDADPNLDEMNSMDKFLSHQKELATMRDQYVSYSDHPQAEKLRKRLDVFEESSVAFTYVYFTMMQYKREALLANANEMDMANAVIELKHELNILTKLKENED

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