Scaffold Ga0307993_1002479

Overview

Basic Information

• Taxon OID: 3300031602
• Scaffold ID: Ga0307993_1002479
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5727
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046021	Metagenome / Metatranscriptome	152	Y
F072747	Metagenome	121	N
F089439	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307993_10024791	F089439	N/A	KGNIFICLNRATYKGNIPTELEGKYSRKVYDEEGELIEILPTTFEKMASDNRIKYGGVLEFKIGAKKYFVIELDCSWLDGSVSALLDLGSDLAYPNNCLMTNEEAMVLVRANQPKDAI
Ga0307993_10024797	F046021	N/A	MKKLTPKYNDNKSIRLKIDKLLEQNCSNVANSDTGSQNDIGGEKEVQWAWEKIQERIKELDPIFYEVIKSR
Ga0307993_10024799	F072747	N/A	MKTNDNITTKAIQLLRDADPNLDEMNSMDKFLSHQKELATMRDQYVSYSDHPQAEKLRKRLDVFEESSVAFTYVYFTMMQYKREALLANANEMDMANAVIELKHELNILTKLKENED