NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307992_1055235

Scaffold Ga0307992_1055235


Overview

Basic Information
Taxon OID3300031601 Open in IMG/M
Scaffold IDGa0307992_1055235 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1696
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021804Metagenome / Metatranscriptome217Y
F058067Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0307992_10552352F021804N/AMMLPKTLNTAKLKVKYVLGNHTTLPSYPDAEDVIFELIRDYCGKVAKEIKFTDISMAKRWNLSKEQCDTILTTLLKHKLVNISLQNSAYTTYEVIYNPYE
Ga0307992_10552353F058067N/AEGQRIDCRKHSFTKDKKEVTAYFQPSPTARKICVKHLNDVVDLNQLYTPQVLTDDVLRLIEPLVAAKFTYGDELEQEELGNIITETVDDATENS

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