Scaffold Ga0307930_1024948

Overview

Basic Information

• Taxon OID: 3300031600
• Scaffold ID: Ga0307930_1024948
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #46
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2422
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006034	Metagenome	383	Y
F018841	Metagenome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307930_10249481	F006034	N/A	MLSNYDLDELVIKMGINNFKGCFYKDTLKKIEPSSSYIINLNSEFNEKNERNAGSHWVALITDDMKKGIFFDSYGEKEPNEIKNLLKSNQYKIAHTSKNIQSLMSNLCGFFCLAFIYFLTISKHRTKNIINDASIFLGLFEDLD
Ga0307930_10249484	F018841	N/A	MNVSLNLSPGQLSKLRNGHGIRVSRAMFGSGVDMIIDPGNFNNMMKKLERGKGAVISMSGGEIEQNKMEGTGLFAGSGNKSGKISRRKKAGKWTGYVDDTLRKGIDTARYGFEQYKEATNPLASEGKKAIKGLSKMFGGELDDDEMEGEGFFDDIKKGYNRKIKNSDLGKALRGSARSAISDGYDRGAKELGKNKYGKPISQYMRNKRGSNVDKLTGYTGLGLRMAGDGKMRPAVVRPDFSKWKNAVERSPGMRPAVVRPDPRELKKYFKNIKRKGLENVCKRFNYGW