NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302134_10261035

Scaffold Ga0302134_10261035


Overview

Basic Information
Taxon OID3300031596 Open in IMG/M
Scaffold IDGa0302134_10261035 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB9_SCM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)674
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium BACL1 MAG-120619-bin26(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)66
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072762Metagenome121Y
F090890Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0302134_102610351F072762N/AVIIIVVCMAWIWRKLKDIETHLKERDLVQEKHNKDIAAYLSSISQEAINQEWERKNKD
Ga0302134_102610352F090890AGGAMSIWWDKYKFLIILVVFACFTYLLSDNQTANEEGKVLDDETFAEIQECITRNKIGFSKEIFEEGAEEQMIKDDIDRATQQVIALCTDFGKETE

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