Scaffold Ga0307996_1130878

Overview

Basic Information

• Taxon OID: 3300031589
• Scaffold ID: Ga0307996_1130878
• Source Dataset Name: Marine microbial communities from David Island wharf, Antarctic Ocean - #35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 663
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5781
  • Long. (^o): 77.9617
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047922	Metagenome / Metatranscriptome	149	Y
F083238	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307996_11308781	F047922	GAGG	MILPVLEMTPQEIVLHKAQWMMANYYESHTHTDLRKDVLEWCKAHCFQWRFDFKRFTDIYADTVRFELEEDFTAFNEWYRG
Ga0307996_11308783	F083238	N/A	SLATHWVYEDGEEVAYEPHELASNIAHELVHAKQFCKEQINMIDNVWKHNNLILNCDEVDYEDLPWEVEAYTYEVFLTDILWENV