Scaffold Ga0308134_1034165

Overview

Basic Information

• Taxon OID: 3300031579
• Scaffold ID: Ga0308134_1034165
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1120_Surface (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1169
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 74.0136
  • Long. (^o): -139.5971
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007722	Metagenome / Metatranscriptome	346	Y
F095250	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308134_10341651	F095250	AGGA	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRISSAVDTAGTSATADTFLNVS
Ga0308134_10341653	F007722	N/A	YACARVGKLLKSVKGLEWDTIATLTGDVGTIKKSIQTLNNRINGLNSPKLNDDLLQYAIKQQSNVTDINKNSLGG