Scaffold Ga0310915_10002039

Overview

Basic Information

• Taxon OID: 3300031573
• Scaffold ID: Ga0310915_10002039
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10632
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002225	Metagenome / Metatranscriptome	580	Y
F018142	Metagenome / Metatranscriptome	236	N
F035263	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310915_1000203915	F035263	AGTAG	MQPELDNITMVPSDKHCAFLCENCDRPPVSPDGALPPTEPEPARSGLAASLCTNEPVSVPTTRPTLVPSEDDLDECEILLRRAIEMVRGSTRWSQPTRSLTDRMPGRSLSSRVVQIHHDPGDVTYVATDDKSGLCVLRHRDRARLQAMCDRIGWQVVEADTPARTTERS
Ga0310915_100020398	F018142	GGAGG	VHELRPSHVRVSVVEYKHHLIEVFEDQPGRWFAYFRRLDGQNITGAESNSLRTPSARYSKEDAIGFAKEVIDGWPDS
Ga0310915_100020399	F002225	AGGA	VLSLEMAREQARQPRGSPNGPVSKPSNQRPLERLEAENAQLRERVADLMLQIQALRDGGN