Scaffold Ga0307489_10464751

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0307489_10464751

Scaffold Ga0307489_10464751

Overview

Basic Information
Taxon OID	3300031569 Open in IMG/M
Scaffold ID	Ga0307489_10464751 Open in IMG/M
Source Dataset Name	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	854
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.3731	Long. (^o)	-156.5049	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F079229	Metagenome	116	Y
F081777	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307489_104647512	F079229	AGG	MTTLLTRLDDVQYDFNFQHALATNDTALLVSALSDHGVLITIAEANELIVNLKRGGASHD
Ga0307489_104647514	F081777	N/A	RGYKMKDYKHKRLEASLEVRKQARLDKYLSIGLSTLGALIGIFCIVFATHVALG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.