Scaffold Ga0307489_10190873

Overview

Basic Information

• Taxon OID: 3300031569
• Scaffold ID: Ga0307489_10190873
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1264
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F059985	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307489_101908731	F004606	GAG	MKAHRIFTKGQTVYCLLSSFSRPNVLLPIKGLIVDTQWDPINPLYQVRIIKMYDNMKYLKSHFFEMNFKYEFNNRARKMPIKREDFKNVKSLEDRFDESDRERLYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEVKDISSRPFFKGSLSTDSPLEFNARFKKGWADKFKNGDIDIDKYLNSLS
Ga0307489_101908732	F008190	N/A	METSVEFNFIYSKDAVKVKSFLGNVPRNIECINYMDIFNKLTKNDFYQFEPSDAVVSSYLMKQLQTVFDRNSTSIFYVLGNLNEHTVKGIKTYVESLTNKEITYNIYHSPDINVNGSATLFENVIEFE
Ga0307489_101908733	F059985	N/A	RVINDNHGGGKEQWTSIDVFESTEDQRNKYEYIMRFFYELCDDLGLNCGNKFEKEVLKTRVEWGTHYEPNKKEIESKIKELQAEIDLLTEWKQA