Scaffold Ga0307379_10755998

Overview

Basic Information

• Taxon OID: 3300031565
• Scaffold ID: Ga0307379_10755998
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 864
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003714	Metagenome / Metatranscriptome	472	Y
F014261	Metagenome	264	Y
F105031	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_107559982	F105031	N/A	MPDPSHRPYQPMTIIRPHDKPPLWWLFPWSYASTLHTAANALRSLSDRQDKALEMQAHIIADQSEEIANLRRRVEDLNEALHGPRK
Ga0307379_107559983	F003714	N/A	MPNAHHPYTDHLTFAGRPIPLKRPMAVYAAVRLQAILPQIAALNAAGKTQADAAAALDTTVQTLRKWIEITGTKWTNLKARGSYKTPHA
Ga0307379_107559984	F014261	N/A	MKALIALTFLIVFGWTAAVTFYGPELYRAINGPEPVKAKVHRHR