Scaffold Ga0307379_10372699

Overview

Basic Information

• Taxon OID: 3300031565
• Scaffold ID: Ga0307379_10372699
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1379
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014609	Metagenome	261	Y
F018353	Metagenome	235	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_103726992	F028786	AGAAG	MQSFNYKQLSLAAIAFLAAWQATDFALDYRAVLGAIVAASMGAMNPNARKTKTK
Ga0307379_103726994	F018353	AGG	MSKPKSKKKTIELPDVMASELVRIINTAHEDGKLITGFVACLELFDGKKKTIKIVANQDMPQHSVFGIINYAAEKYQFTMSPEEDEDDDFYDPEWFDGQ
Ga0307379_103726995	F014609	GAG	MINELIGIIGLLITVLILVIRATVEITKMKTQLFPNGGTSLNDKVTRLQIEVTKIRSTMDSISKQLGTPKRKR