Scaffold Ga0307379_10316128

Overview

Basic Information

• Taxon OID: 3300031565
• Scaffold ID: Ga0307379_10316128
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1533
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026509	Metagenome / Metatranscriptome	197	Y
F071027	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_103161282	F026509	N/A	MNGYKYNTETEAIAARQTAADYMGLPVEGGETLYWVGFQYSELDGFWYIQYVEDLEKALGEPIEFDVTFPDFIXNYQ
Ga0307379_103161283	F071027	N/A	MKLPITFEQFKSDPLKALLLISFSAMSVLYYRAEAQSKEINQRCEERLQLCEAKLDKLSKALKTQDSLCSALITEITIYKSLGKIXSTF