Scaffold Ga0307379_10171999

Overview

Basic Information

• Taxon OID: 3300031565
• Scaffold ID: Ga0307379_10171999
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2250
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025412	Metagenome	202	Y
F027524	Metagenome	194	N
F099320	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_1017199910	F027524	N/A	CKHSDIWRDLSQEVSIYFLTNALPENLDKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLIESTELDYLKEIDIPYVDGNVYKEYIEQVGQLDEMERIWVEEIVKRNLSIRLFSDHTGIHRATATERMNLIYEKLRNKNK
Ga0307379_101719997	F099320	N/A	MEENVYSYCLEVHEDGNLYMVTEYNNGYITIWPANATIEDEGEVYFINLHE
Ga0307379_101719998	F025412	GAG	MNYREMKWGALKSYGTKLGIDTKGMTKELLLEWLDAMPDVAHGIEQLEPFKGIKQNHPLFDEIKDYLPYLKAFKRLKAVSPVKEVNVAIATLFMKYIEEQKNIAINLGCGICKHKYYERLIAGYNKLVDQYGGERI