Scaffold Ga0307379_10018335

Overview

Basic Information

• Taxon OID: 3300031565
• Scaffold ID: Ga0307379_10018335
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8819
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F025977	Metagenome / Metatranscriptome	199	Y
F074450	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307379_100183351	F000716	N/A	KLKQDVKNYQLHAGKTYMQYEQDKYSVYQNYLYKRALYGLDALTEKELATMCSKKKQRILNVYKRAQVVLNTLKQKITIDYTNSIFKSLFPNSKLTADLLNYSEVDEKFKNTLTFKDLNIDKDNIIRIFMSEGILPKNFLSLTEAPVTLPMLKNANKA
Ga0307379_1001833515	F025977	N/A	VNQYNGKMTEIFIKLIQHGLTPNSFYVLHCIKEKIVPHNFVNKELECRRLQKDHWLTESLELTDKSIIFTTEIDGYFKKSKKKTSKDLMGHNFMQNIEAYVNIFPNRKLSSGKYARVPAKNLESAFRWFFDTYNYDWETIFLATQKYVLEYESNNYDYMRTAQYFLRKQNIDKSWDSDLATYCEFLKDNPDEDKDVFSELIV
Ga0307379_100183356	F074450	N/A	MEDYTKEEVLQALSKITVNSRKRFLVDQRSYLIGILAYRFMLSEHTIAKLTNIKRYSINYNKKIALDFHKDKSYIQNVYVYAQMFPFDFSVIERGKSISDRSVRVELDLDRKLFNKLKAVGAIKGQSDIRVTIKFFLEKSLTIWDE