Scaffold Ga0307436_1000069

Overview

Basic Information

• Taxon OID: 3300031563
• Scaffold ID: Ga0307436_1000069
• Source Dataset Name: Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39831
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.759
  • Long. (^o): -70.891
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008634	Metagenome / Metatranscriptome	330	Y
F034415	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307436_100006914	F034415	AGG	MSASPGHKRSQHLIEGEAYRRIMAGEAPATLAEFAQQLLDWLQASYSDASPMTLTAVEDQIRDTWHRRHEMIRGGDP
Ga0307436_100006918	F008634	GGAG	MYGQGRELEIGNATSAILISLLQTLIDKDVLSNGEVRALLTKAASDLGPHDYTAPVKGAIGIILDDILAKFPNGGD