NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310886_10097237

Scaffold Ga0310886_10097237


Overview

Basic Information
Taxon OID3300031562 Open in IMG/M
Scaffold IDGa0310886_10097237 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1459
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024048Metagenome / Metatranscriptome207Y
F053943Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0310886_100972371F024048N/AVIDELVAPVLHNKEPVNDVAVNVELPQLSTTDTTGADGIAFGAATPLRDGLVHPFTVCVT
Ga0310886_100972372F053943N/AVIDEVVAPLLHNKEPVKDVAVNVELPQLSTTDTTGSDGIAFGAAAPLPEELLHPFTICVTEYVPAVVTVIDEVVAPLLHNNEPVKDVAVNVELPQLFTTVTTGADGIAFGAAIPLPGRLAHPLTVWVTV
Ga0310886_100972373F053943N/AVIDEVVAPLLHNKEPVKDVAVNIELPQVFTTVTTGADGIAFGAVTPLPEGLVHPFTVCVTVYVPAVVTVIDEVVAPLLHNNEPLNEPAVNVELPQSSITDTVGADIFAFNGAATPLPDELVQLFTVWVTV
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