NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315542_1000055

Scaffold Ga0315542_1000055


Overview

Basic Information
Taxon OID3300031552 Open in IMG/M
Scaffold IDGa0315542_1000055 Open in IMG/M
Source Dataset NameSalt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54174
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (86.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.722Long. (o)-70.847Alt. (m)Depth (m).2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034814Metagenome173Y
F074388Metagenome119N
F081864Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0315542_10000552F074388GGGGGMKAAEKKKVNKAVGVVVDPTYFNEIPLADIMEAIEGLGYLVVDEEHNRWSGFLCGSQGQAMFNILSKETGKLDNSNLMLSWYTMASGRYEVLAYVA
Ga0315542_10000553F081864GAGGMWLETLNRGQELRFLSLLERLVLKSEIRRQTMEADTTQFQASNGKPPRGFGRWGFQIGNEKHFVVGRYSNSKKEAFKIAQTRGEERVVVLPDKRLAPQGGNPERPETMNQEQINSIKNRLMAQAEVRKFGKRTRTVIPVNGMKAAEIMVVFDVQSKRTAHAIVKRGFHIVDYTKPAKCPGTMADVEGAYRLAKWWFYKKLAGRVPHWADGGDMIQEAVTRLAEMAGDPRMSEPSFAFYVIKAAMAAYLRSNQKHQHEDEEKIEAPGSRWGTWDRSYRHTETMCRMIEARGITPMAWAA
Ga0315542_100005536F034814AGGMTSLAAEKIETLPGLYSCFTCADNLGCNLEPRCESMDGCIKWRCRVCRAPWWTVGYDHEACNATGVPNGVTYHDGTHMAPLPEASGHYYTHGGIYCEVHKSWRCGLLR
Ga0315542_10000554F034814AGGAGGMTSLAAKKIETIPGLHSCFTCADNLGCNLEPRCESMAGCIKWRCRVCRAPWWVVGYDHEACNATGVPNGVTYHDGTHMAPLPEASGHYYRYSGYCSVHQSWRCGLA

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