Scaffold Ga0315542_1000055

Overview

Basic Information

• Taxon OID: 3300031552
• Scaffold ID: Ga0315542_1000055
• Source Dataset Name: Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54174
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (86.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.722
  • Long. (^o): -70.847
  • Depth (m): .2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034814	Metagenome	173	Y
F074388	Metagenome	119	N
F081864	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315542_10000552	F074388	GGGGG	MKAAEKKKVNKAVGVVVDPTYFNEIPLADIMEAIEGLGYLVVDEEHNRWSGFLCGSQGQAMFNILSKETGKLDNSNLMLSWYTMASGRYEVLAYVA
Ga0315542_10000553	F081864	GAGG	MWLETLNRGQELRFLSLLERLVLKSEIRRQTMEADTTQFQASNGKPPRGFGRWGFQIGNEKHFVVGRYSNSKKEAFKIAQTRGEERVVVLPDKRLAPQGGNPERPETMNQEQINSIKNRLMAQAEVRKFGKRTRTVIPVNGMKAAEIMVVFDVQSKRTAHAIVKRGFHIVDYTKPAKCPGTMADVEGAYRLAKWWFYKKLAGRVPHWADGGDMIQEAVTRLAEMAGDPRMSEPSFAFYVIKAAMAAYLRSNQKHQHEDEEKIEAPGSRWGTWDRSYRHTETMCRMIEARGITPMAWAA
Ga0315542_100005536	F034814	AGG	MTSLAAEKIETLPGLYSCFTCADNLGCNLEPRCESMDGCIKWRCRVCRAPWWTVGYDHEACNATGVPNGVTYHDGTHMAPLPEASGHYYTHGGIYCEVHKSWRCGLLR
Ga0315542_10000554	F034814	AGGAGG	MTSLAAKKIETIPGLHSCFTCADNLGCNLEPRCESMAGCIKWRCRVCRAPWWVVGYDHEACNATGVPNGVTYHDGTHMAPLPEASGHYYRYSGYCSVHQSWRCGLA