Basic Information | |
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Taxon OID | 3300031552 Open in IMG/M |
Scaffold ID | Ga0315542_1000055 Open in IMG/M |
Source Dataset Name | Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-20 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 54174 |
Total Scaffold Genes | 43 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (86.05%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.722 | Long. (o) | -70.847 | Alt. (m) | Depth (m) | .2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F034814 | Metagenome | 173 | Y |
F074388 | Metagenome | 119 | N |
F081864 | Metagenome | 114 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315542_10000552 | F074388 | GGGGG | MKAAEKKKVNKAVGVVVDPTYFNEIPLADIMEAIEGLGYLVVDEEHNRWSGFLCGSQGQAMFNILSKETGKLDNSNLMLSWYTMASGRYEVLAYVA |
Ga0315542_10000553 | F081864 | GAGG | MWLETLNRGQELRFLSLLERLVLKSEIRRQTMEADTTQFQASNGKPPRGFGRWGFQIGNEKHFVVGRYSNSKKEAFKIAQTRGEERVVVLPDKRLAPQGGNPERPETMNQEQINSIKNRLMAQAEVRKFGKRTRTVIPVNGMKAAEIMVVFDVQSKRTAHAIVKRGFHIVDYTKPAKCPGTMADVEGAYRLAKWWFYKKLAGRVPHWADGGDMIQEAVTRLAEMAGDPRMSEPSFAFYVIKAAMAAYLRSNQKHQHEDEEKIEAPGSRWGTWDRSYRHTETMCRMIEARGITPMAWAA |
Ga0315542_100005536 | F034814 | AGG | MTSLAAEKIETLPGLYSCFTCADNLGCNLEPRCESMDGCIKWRCRVCRAPWWTVGYDHEACNATGVPNGVTYHDGTHMAPLPEASGHYYTHGGIYCEVHKSWRCGLLR |
Ga0315542_10000554 | F034814 | AGGAGG | MTSLAAKKIETIPGLHSCFTCADNLGCNLEPRCESMAGCIKWRCRVCRAPWWVVGYDHEACNATGVPNGVTYHDGTHMAPLPEASGHYYRYSGYCSVHQSWRCGLA |
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