Scaffold Ga0307408_100021402

Overview

Basic Information

• Taxon OID: 3300031548
• Scaffold ID: Ga0307408_100021402
• Source Dataset Name: Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4376
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Maize Rhizosphere Microbial Communities From Greenhouse At Uc Davis, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 38.5
  • Long. (^o): -121.7

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059325	Metagenome	134	N
F070541	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307408_1000214023	F059325	N/A	VHRDAVVRHLLRVIGRLLPVTTISNVSAPRSGAGARLVNLVIDPRAAFRGIAGDPSWALAFGAAVGIRFGSLFLFYRPAVTPIRVIGGLLFQVMTIGPTVLLVALIAWLTARAWHVGVAWPTAVSILMHVYVAFTLATVAFASVAGALLPQSVDVDLRNPPFTNVTSLLDGTSPEVFRTLVGEMDVRSAYALVLLWVGLRGAAPEAPRAAIARIILTIACLRVAGVLTVSLLR
Ga0307408_1000214024	F070541	GAG	MPTHQIFRRVVWYGLLLSAVDAVSGRLLQAAPDPSVVLSLGATTWVAYRLAESRATRLAFPAAMTLFVVYIAAFVLWARLLVGWNGSVPWRPRSATWMTMFVISAPVIALIAQFVGSRARPKAATEAVSQDH