Scaffold Ga0318541_10003123

Overview

Basic Information

• Taxon OID: 3300031545
• Scaffold ID: Ga0318541_10003123
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6618
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008663	Metagenome / Metatranscriptome	330	Y
F029508	Metagenome / Metatranscriptome	188	Y
F046591	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318541_100031231	F046591	N/A	VNQLAFAVGALAGLVCAAIALALLWRLRLRPPASPYDAQHLAVFEQWPTTAIALDPATMRWVSGNPASLRNLGYTLDQLRALKFDDIFSVEGVEGRGALLKLLQEATSRAP
Ga0318541_100031236	F008663	AGG	MEARKLRESDSEPFQLSLRIRHPSIDPDELSREFSIEAAHCFRAGDPRLSRSGIASVHPESYWLGALNTANWPVEVTSPGVRRLLSSQERMGGVATRSLGWALALSTRVFTAHAQTLRRIVAEGGQVSLLITAPAGEVNGFSLTPAVSRAFSQLGITLEFEFTGD
Ga0318541_100031238	F029508	GAGG	VKPVNVPPQDSARLGAMSIFTSVVLIVVTLLAAYLLWSLLLRAEHLYARLEGHGQTAADIAGVAFLGLTAVIVFGALAALRIEAGQLISALFH